miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|209463270|gb|BY806856.1|BY806856 AGTTCATCAATTATTTAACTGGAGGCTTTAGAAGCCCCCAAAACACAAACAACGAGAAGTTTTAGAAACACGAAACGACT
TTTGAAAACATGATAAAGTAACCAGGCGCAAGTTTTTAGAAACCACCACGAAGACGGAGAACCAAGTGAAGGGTCGACTC
CTTCTGAATGTTGTAATCAGCAAGTGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAG
GGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCCACCTCGAGGGTAATTGTCTTT
CCGGTGAGTGTCTTCACAAAGATCTGCATACCACCACGCAGACGCAGAACCAAGTGAAGGGTCGATTCCTTCTGAATGTT
GTAATCCGCCAAGGTACGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCCGGAGGGATGCCTTCTT
TGTCCTGGATCTTAGCCTTGACATTGTCA




Most similar to sp|Q3E7T8|UBQ14_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q3E7T8|UBQ14_ARATH Polyubiquitin 14 OS=Arabidopsis thaliana
           GN=UBQ14 PE=1 SV=2
          Length = 305

 Score =  256 bits (655), Expect = 4e-68
 Identities = 130/130 (100%), Positives = 130/130 (100%)
 Frame = -2

Query: 508 DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKT 329
           DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKT
Sbjct: 176 DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKT 235

Query: 328 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 149
           LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL
Sbjct: 236 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 295

Query: 148 HLVLRLRGGF 119
           HLVLRLRGGF
Sbjct: 296 HLVLRLRGGF 305



 Score =  254 bits (649), Expect = 2e-67
 Identities = 129/129 (100%), Positives = 129/129 (100%)
 Frame = -2

Query: 508 DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKT 329
           DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKT
Sbjct: 24  DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKT 83

Query: 328 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 149
           LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL
Sbjct: 84  LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 143

Query: 148 HLVLRLRGG 122
           HLVLRLRGG
Sbjct: 144 HLVLRLRGG 152



 Score =  254 bits (649), Expect = 2e-67
 Identities = 129/129 (100%), Positives = 129/129 (100%)
 Frame = -2

Query: 508 DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKT 329
           DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKT
Sbjct: 100 DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKT 159

Query: 328 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 149
           LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL
Sbjct: 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 219

Query: 148 HLVLRLRGG 122
           HLVLRLRGG
Sbjct: 220 HLVLRLRGG 228



 Score =  150 bits (379), Expect = 4e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = -2

Query: 349 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 170
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 169 IQKESTLHLVLRLRGG 122
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76